Partial domestic reverse charge

Little headache here, hope someone out there can help.

I did send an invoice to a customer, partly labour, partly material. And they paid, deducting the CIS on the labour bit (which I believe is VAT deduction as domestic reverse charge), but paid the VAT on the material. Any idea how to book that as a payment pretty please? I seem to be only apply domestic reverse charge on the whole invoice or not at all, neither works for obvious reasons. I simple terms pease, I can fix a lot with a screwdriver, but accounts isn’t really my thing.

TIA

Tom

CIS and reverse charge VAT are two different things. If it were reverse charge VAT it would have been all the VAT on the whole invoice. A 20% deduction off just the labour portion sounds more like CIS income tax (which you offset against your PAYE payments if you’re ltd or your self assessment if you’re a sole trader) rather than anything to do with VAT. It’s slightly confusing that both of these use the same percentage rate but they are different.

There is a guide in the knowledge base for how best to account for this.