All final journals should be done before year end routine is run. Accountant should do closing journals on QF and then run year end routine.
Number of times I have seen other accountants ignoring closing adjusting journals and no even running year end routine just to discover previous years’s balance sheet does not tally with submitted accounts is ultra annoying and very unprofessional. It does not provide good starting point if adjusting journals are not done on QF which leads to misleading opening balances on balance sheet.