Hi @tom_44
Essentially there are 3 parts to a payment through a merchant account:
- The full payment coming into the merchant from your client - tagged to the invoice
- The fee taken by the merchant - tagged as a supplier invoice
- The balance paid out to you - tagged as a transfer between accounts
You would therefore have 3 transactions representing this - the first 2 in the merchant account itself, and the last one in your current account (or wherever the funds are deposited).
You may also find this guide helpful:
I hope that helps!