I note that he is complying with the UK VAT regulation by using adjustments but I note that on the VAT page of the it states that these adjustments will not be sent to HMRC . Therefore I will not be MTD compliant. Please help.
This just means that HMRC won’t see the amount by which you adjusted it, they only see the final adjusted figure.
QuickFile doesn’t support the reverse charge at all - the checkbox labelled “reverse charge” actually applies the EC acquisitions rules rather than the reverse charge procedure. For reverse charge transactions you have to move the VAT from box 2 to 1 and the net from 9 to 6 as per the linked post.