I’m pleased to hear that you have found the software to be useful!
Unfortunately you’ve just encountered a slight limitation with regard to out of scope VAT items. We don’t currently have any way to differentiate this so the VAT return would need to be manually adjusted. The good news is that we are committed to resolving this in the next 6-8 weeks. There is a similar discussion here along the same lines, with a workaround…We will be updating this thread once the limitation has been resolved.
http://community.quickfile.co.uk/t/zero-outside-scope-vat/1572